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The map shows 4 pickup stands for Vessel Fragments. They are read from the files as the game's 'Vessel Fragment Control' object, so this is a list of stands, not a checklist of every fragment.
Stands by area: City of Tears (1), Crossroads (1), Deepnest (1), Green Path (1).
4 of the 6 'Vessel Fragment Control' objects in the files are placed on the map. The rest the rest sit in rooms that are not part of the pause map (Godhome, Dream rooms, shops, boss arenas) or have no room position.
Source: the game files of Hollow Knight, version 1.5.78 (Vessel Fragment (pickup stand): 4 pins). These pages read the game files of build 1.5.78.11833 (2021). Steam now has 1.5.12620 (March 2026) with fixes and no new areas; PinDrop has not re-read that build.
PinDrop is fan-made and not affiliated with Team Cherry.